J5_8EKB_006

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

8EKB|1|1A|A|2062, 8EKB|1|1A|A|2448, 8EKB|1|1A|U|2449, 8EKB|1|1A|U|2585, 8EKB|1|1A|U|2609

QA status

Modified nucleotides: 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EKB|1|1A|A|2057
8EKB|1|1A|A|2058
8EKB|1|1A|A|2059
8EKB|1|1A|A|2060
8EKB|1|1A|G|2061
8EKB|1|1A|A|2062
8EKB|1|1A|C|2063
8EKB|1|1A|C|2064
*
8EKB|1|1A|G|2446
8EKB|1|1A|G|2447
8EKB|1|1A|A|2448
8EKB|1|1A|U|2449
8EKB|1|1A|A|2450
8EKB|1|1A|A|2451
8EKB|1|1A|C|2452
8EKB|1|1A|A|2453
*
8EKB|1|1A|U|2500
8EKB|1|1A|C|2501
8EKB|1|1A|G|2502
8EKB|1|1A|2MA|2503
8EKB|1|1A|U|2504
8EKB|1|1A|G|2505
8EKB|1|1A|U|2506
8EKB|1|1A|C|2507
*
8EKB|1|1A|G|2582
8EKB|1|1A|G|2583
8EKB|1|1A|U|2584
8EKB|1|1A|U|2585
8EKB|1|1A|C|2586
8EKB|1|1A|A|2587
8EKB|1|1A|G|2588
*
8EKB|1|1A|C|2606
8EKB|1|1A|G|2607
8EKB|1|1A|G|2608
8EKB|1|1A|U|2609
8EKB|1|1A|C|2610
8EKB|1|1A|U|2611

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1D

50S ribosomal protein L2

Chain 1E

50S ribosomal protein L3

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15

Chain 1Q

50S ribosomal protein L16

Chain 1W

50S ribosomal protein L22

Chain 1x

Transfer RNA; tRNA