3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
8EMM|1|A|A|60, 8EMM|1|A|A|109, 8EMM|1|A|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8EMM_003 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.0914
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8EMM|1|A|C|58
8EMM|1|A|A|59
8EMM|1|A|A|60
8EMM|1|A|G|61
*
8EMM|1|A|C|106
8EMM|1|A|G|107
8EMM|1|A|G|108
8EMM|1|A|A|109
8EMM|1|A|C|110
8EMM|1|A|G|111
8EMM|1|A|G|112
8EMM|1|A|G|113
*
8EMM|1|A|C|314
8EMM|1|A|A|315
8EMM|1|A|C|316
*
8EMM|1|A|G|337
8EMM|1|A|A|338
8EMM|1|A|C|339
*
8EMM|1|A|G|350
8EMM|1|A|G|351
8EMM|1|A|C|352
8EMM|1|A|A|353
8EMM|1|A|G|354

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain T
30S ribosomal protein S20
Chain j
50S ribosomal protein L14
Chain o
50S ribosomal protein L19

Coloring options:


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