J5_8EMM_004

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8EMM|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8EMM_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0457

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8EMM|1|a|C|47
8EMM|1|a|G|48
8EMM|1|a|A|49
8EMM|1|a|U|50
8EMM|1|a|G|51
8EMM|1|a|A|52
8EMM|1|a|A|53
8EMM|1|a|G|54
*
8EMM|1|a|C|116
8EMM|1|a|G|117
8EMM|1|a|A|118
8EMM|1|a|A|119
8EMM|1|a|U|120
8EMM|1|a|G|121
*
8EMM|1|a|C|130
8EMM|1|a|A|131
*
8EMM|1|a|U|148
8EMM|1|a|A|149
8EMM|1|a|U|150
*
8EMM|1|a|A|176
8EMM|1|a|G|177
8EMM|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34