J5_8EUB_007

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGG(A2M)ACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|B5|C|31
8EUB|1|B5|U|32
8EUB|1|B5|U|33
8EUB|1|B5|G|34
8EUB|1|B5|U|35
*
8EUB|1|B5|A|473
8EUB|1|B5|A|474
8EUB|1|B5|A|475
8EUB|1|B5|U|476
8EUB|1|B5|A|477
8EUB|1|B5|A|478
8EUB|1|B5|C|479
*
8EUB|1|B5|G|509
8EUB|1|B5|G|510
8EUB|1|B5|A|511
8EUB|1|B5|A|512
8EUB|1|B5|U|513
8EUB|1|B5|G|514
8EUB|1|B5|A|515
8EUB|1|B5|G|516
*
8EUB|1|B5|C|536
8EUB|1|B5|G|537
8EUB|1|B5|A|538
8EUB|1|B5|G|539
8EUB|1|B5|G|540
8EUB|1|B5|A2M|541
8EUB|1|B5|A|542
8EUB|1|B5|C|543
8EUB|1|B5|A|544
8EUB|1|B5|A|545
8EUB|1|B5|U|546
*
8EUB|1|B5|A|592
8EUB|1|B5|U|593
8EUB|1|B5|A|594
8EUB|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A