Loop J5_8EUB

3D structure

PDB id: 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
Description: Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
Length: 41 nucleotides
Bulged bases: 8EUB|1|B5|U|128, 8EUB|1|B5|U|134, 8EUB|1|B5|A|135, 8EUB|1|B5|C|136, 8EUB|1|B5|U|137, 8EUB|1|B5|A|140, 8EUB|1|B5|U|141, 8EUB|1|B5|U|178
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8EUB|1|B5|A|124
8EUB|1|B5|U|125
8EUB|1|B5|A|126
8EUB|1|B5|G|127
8EUB|1|B5|U|128
8EUB|1|B5|U|129
8EUB|1|B5|C|130
8EUB|1|B5|C|131
8EUB|1|B5|U|132
8EUB|1|B5|U|133
8EUB|1|B5|U|134
8EUB|1|B5|A|135
8EUB|1|B5|C|136
8EUB|1|B5|U|137
8EUB|1|B5|A|138
8EUB|1|B5|C|139
8EUB|1|B5|A|140
8EUB|1|B5|U|141
8EUB|1|B5|G|142
8EUB|1|B5|G|143
*
8EUB|1|B5|C|172
8EUB|1|B5|A|173
8EUB|1|B5|U|174
8EUB|1|B5|G|175
8EUB|1|B5|C|176
8EUB|1|B5|U|177
8EUB|1|B5|U|178
8EUB|1|B5|A|179
8EUB|1|B5|A|180
8EUB|1|B5|A|181
8EUB|1|B5|A|182
*
8EUB|1|B5|U|203
8EUB|1|B5|G|204
*
8EUB|1|B5|C|263
8EUB|1|B5|G|264
8EUB|1|B5|A|265
*
8EUB|1|B5|U|289
8EUB|1|B5|G|290
8EUB|1|B5|G|291
8EUB|1|B5|U|292
8EUB|1|B5|U|293

Current chains

Chain B5: 18S rRNA

Nearby chains

Chain BE: 40S ribosomal protein S4-A
Chain BG: 40S ribosomal protein S6-A
Chain BI: 40S ribosomal protein S8-A

J5_8EUB_009