J5_8EV6_002
3D structure
- PDB id
- 8EV6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.946 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 8EV6|1|1A|U|288, 8EV6|1|1A|U|432
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EV6|1|1A|C|257
8EV6|1|1A|U|258
8EV6|1|1A|A|259
8EV6|1|1A|A|260
8EV6|1|1A|A|261
8EV6|1|1A|C|262
*
8EV6|1|1A|G|282
8EV6|1|1A|G|283
8EV6|1|1A|G|284
8EV6|1|1A|U|285
8EV6|1|1A|C|286
8EV6|1|1A|G|287
8EV6|1|1A|U|288
8EV6|1|1A|G|289
*
8EV6|1|1A|C|396
8EV6|1|1A|G|397
8EV6|1|1A|A|398
8EV6|1|1A|G|399
8EV6|1|1A|U|400
8EV6|1|1A|A|401
8EV6|1|1A|C|402
*
8EV6|1|1A|G|426
8EV6|1|1A|G|427
8EV6|1|1A|A|428
8EV6|1|1A|A|429
8EV6|1|1A|U|430
8EV6|1|1A|C|431
8EV6|1|1A|U|432
8EV6|1|1A|G|433
*
8EV6|1|1A|U|448
8EV6|1|1A|A|449
8EV6|1|1A|A|450
8EV6|1|1A|G|451
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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