J5_8EV6_014

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

8EV6|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EV6|1|2A|C|601
8EV6|1|2A|G|602
8EV6|1|2A|A|603
8EV6|1|2A|G|604
*
8EV6|1|2A|C|624
8EV6|1|2A|G|625
8EV6|1|2A|U|626
8EV6|1|2A|A|627
8EV6|1|2A|G|628
*
8EV6|1|2A|C|635
8EV6|1|2A|G|636
8EV6|1|2A|A|637
8EV6|1|2A|G|638
*
8EV6|1|2A|C|650
8EV6|1|2A|G|651
8EV6|1|2A|C|652
8EV6|1|2A|A|652|||A
8EV6|1|2A|A|652|||B
8EV6|1|2A|G|652|||C
*
8EV6|1|2A|C|652|||V
8EV6|1|2A|A|653
8EV6|1|2A|A|654
8EV6|1|2A|A|655
8EV6|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15