J5_8EVR_007

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGG(A2M)ACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVR|1|B5|C|31
8EVR|1|B5|U|32
8EVR|1|B5|U|33
8EVR|1|B5|G|34
8EVR|1|B5|U|35
*
8EVR|1|B5|A|473
8EVR|1|B5|A|474
8EVR|1|B5|A|475
8EVR|1|B5|U|476
8EVR|1|B5|A|477
8EVR|1|B5|A|478
8EVR|1|B5|C|479
*
8EVR|1|B5|G|509
8EVR|1|B5|G|510
8EVR|1|B5|A|511
8EVR|1|B5|A|512
8EVR|1|B5|U|513
8EVR|1|B5|G|514
8EVR|1|B5|A|515
8EVR|1|B5|G|516
*
8EVR|1|B5|C|536
8EVR|1|B5|G|537
8EVR|1|B5|A|538
8EVR|1|B5|G|539
8EVR|1|B5|G|540
8EVR|1|B5|A2M|541
8EVR|1|B5|A|542
8EVR|1|B5|C|543
8EVR|1|B5|A|544
8EVR|1|B5|A|545
8EVR|1|B5|U|546
*
8EVR|1|B5|A|592
8EVR|1|B5|U|593
8EVR|1|B5|A|594
8EVR|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A