J5_8EVR_011
3D structure
- PDB id
- 8EVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- ACUUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGACGUUUGG*CCAUCGUAAUGAU
- Length
- 52 nucleotides
- Bulged bases
- 8EVR|1|B5|U|638, 8EVR|1|B5|U|639, 8EVR|1|B5|U|694, 8EVR|1|B5|C|696, 8EVR|1|B5|C|697, 8EVR|1|B5|A|740, 8EVR|1|B5|U|742, 8EVR|1|B5|U|813, 8EVR|1|B5|G|815, 8EVR|1|B5|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EVR|1|B5|A|636
8EVR|1|B5|C|637
8EVR|1|B5|U|638
8EVR|1|B5|U|639
8EVR|1|B5|U|640
8EVR|1|B5|G|641
*
8EVR|1|B5|U|693
8EVR|1|B5|U|694
8EVR|1|B5|U|695
8EVR|1|B5|C|696
8EVR|1|B5|C|697
8EVR|1|B5|U|698
8EVR|1|B5|U|699
8EVR|1|B5|C|700
*
8EVR|1|B5|G|738
8EVR|1|B5|G|739
8EVR|1|B5|A|740
8EVR|1|B5|C|741
8EVR|1|B5|U|742
8EVR|1|B5|U|743
8EVR|1|B5|U|744
*
8EVR|1|B5|A|807
8EVR|1|B5|U|808
8EVR|1|B5|A|809
8EVR|1|B5|G|810
8EVR|1|B5|A|811
8EVR|1|B5|A|812
8EVR|1|B5|U|813
8EVR|1|B5|A|814
8EVR|1|B5|G|815
8EVR|1|B5|G|816
8EVR|1|B5|A|817
8EVR|1|B5|C|818
8EVR|1|B5|G|819
8EVR|1|B5|U|820
8EVR|1|B5|U|821
8EVR|1|B5|U|822
8EVR|1|B5|G|823
8EVR|1|B5|G|824
*
8EVR|1|B5|C|848
8EVR|1|B5|C|849
8EVR|1|B5|A|850
8EVR|1|B5|U|851
8EVR|1|B5|C|852
8EVR|1|B5|G|853
8EVR|1|B5|U|854
8EVR|1|B5|A|855
8EVR|1|B5|A|856
8EVR|1|B5|U|857
8EVR|1|B5|G|858
8EVR|1|B5|A|859
8EVR|1|B5|U|860
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain BE
- 40S ribosomal protein S4-A
- Chain BH
- 40S ribosomal protein S7-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- RPS22A isoform 1
Coloring options: