J5_8EVS_007

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGG(A2M)ACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVS|1|B5|C|31
8EVS|1|B5|U|32
8EVS|1|B5|U|33
8EVS|1|B5|G|34
8EVS|1|B5|U|35
*
8EVS|1|B5|A|473
8EVS|1|B5|A|474
8EVS|1|B5|A|475
8EVS|1|B5|U|476
8EVS|1|B5|A|477
8EVS|1|B5|A|478
8EVS|1|B5|C|479
*
8EVS|1|B5|G|509
8EVS|1|B5|G|510
8EVS|1|B5|A|511
8EVS|1|B5|A|512
8EVS|1|B5|U|513
8EVS|1|B5|G|514
8EVS|1|B5|A|515
8EVS|1|B5|G|516
*
8EVS|1|B5|C|536
8EVS|1|B5|G|537
8EVS|1|B5|A|538
8EVS|1|B5|G|539
8EVS|1|B5|G|540
8EVS|1|B5|A2M|541
8EVS|1|B5|A|542
8EVS|1|B5|C|543
8EVS|1|B5|A|544
8EVS|1|B5|A|545
8EVS|1|B5|U|546
*
8EVS|1|B5|A|592
8EVS|1|B5|U|593
8EVS|1|B5|A|594
8EVS|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A