J5_8EVT_007

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGG(A2M)ACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|B5|C|31
8EVT|1|B5|U|32
8EVT|1|B5|U|33
8EVT|1|B5|G|34
8EVT|1|B5|U|35
*
8EVT|1|B5|A|473
8EVT|1|B5|A|474
8EVT|1|B5|A|475
8EVT|1|B5|U|476
8EVT|1|B5|A|477
8EVT|1|B5|A|478
8EVT|1|B5|C|479
*
8EVT|1|B5|G|509
8EVT|1|B5|G|510
8EVT|1|B5|A|511
8EVT|1|B5|A|512
8EVT|1|B5|U|513
8EVT|1|B5|G|514
8EVT|1|B5|A|515
8EVT|1|B5|G|516
*
8EVT|1|B5|C|536
8EVT|1|B5|G|537
8EVT|1|B5|A|538
8EVT|1|B5|G|539
8EVT|1|B5|G|540
8EVT|1|B5|A2M|541
8EVT|1|B5|A|542
8EVT|1|B5|C|543
8EVT|1|B5|A|544
8EVT|1|B5|A|545
8EVT|1|B5|U|546
*
8EVT|1|B5|A|592
8EVT|1|B5|U|593
8EVT|1|B5|A|594
8EVT|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A