J5_8EWB_005
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8EWB|1|A1|A|2404, 8EWB|1|A1|A|2817, 8EWB|1|A1|U|2873, 8EWB|1|A1|G|2874, 8EWB|1|A1|U|2875, 8EWB|1|A1|U|2978, 8EWB|1|A1|U|2979
- QA status
- Modified nucleotides: OMG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EWB|1|A1|A|2399
8EWB|1|A1|G|2400
8EWB|1|A1|A|2401
8EWB|1|A1|A|2402
8EWB|1|A1|G|2403
8EWB|1|A1|A|2404
8EWB|1|A1|C|2405
8EWB|1|A1|C|2406
*
8EWB|1|A1|OMG|2815
8EWB|1|A1|G|2816
8EWB|1|A1|A|2817
8EWB|1|A1|U|2818
8EWB|1|A1|A|2819
8EWB|1|A1|A|2820
8EWB|1|A1|C|2821
8EWB|1|A1|U|2822
8EWB|1|A1|G|2823
*
8EWB|1|A1|C|2867
8EWB|1|A1|U|2868
8EWB|1|A1|U|2869
8EWB|1|A1|5MC|2870
8EWB|1|A1|G|2871
8EWB|1|A1|A|2872
8EWB|1|A1|U|2873
8EWB|1|A1|G|2874
8EWB|1|A1|U|2875
8EWB|1|A1|C|2876
*
8EWB|1|A1|G|2951
8EWB|1|A1|G|2952
8EWB|1|A1|U|2953
8EWB|1|A1|U|2954
8EWB|1|A1|U|2955
8EWB|1|A1|A|2956
8EWB|1|A1|G|2957
*
8EWB|1|A1|U|2975
8EWB|1|A1|A|2976
8EWB|1|A1|G|2977
8EWB|1|A1|U|2978
8EWB|1|A1|U|2979
8EWB|1|A1|U|2980
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AB
- 60S ribosomal protein L3
- Chain AC
- RPL4A isoform 1
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- RPL29 isoform 1
Coloring options: