J5_8EWB_007

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGG(A2M)ACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|B5|C|31
8EWB|1|B5|U|32
8EWB|1|B5|U|33
8EWB|1|B5|G|34
8EWB|1|B5|U|35
*
8EWB|1|B5|A|473
8EWB|1|B5|A|474
8EWB|1|B5|A|475
8EWB|1|B5|U|476
8EWB|1|B5|A|477
8EWB|1|B5|A|478
8EWB|1|B5|C|479
*
8EWB|1|B5|G|509
8EWB|1|B5|G|510
8EWB|1|B5|A|511
8EWB|1|B5|A|512
8EWB|1|B5|U|513
8EWB|1|B5|G|514
8EWB|1|B5|A|515
8EWB|1|B5|G|516
*
8EWB|1|B5|C|536
8EWB|1|B5|G|537
8EWB|1|B5|A|538
8EWB|1|B5|G|539
8EWB|1|B5|G|540
8EWB|1|B5|A2M|541
8EWB|1|B5|A|542
8EWB|1|B5|C|543
8EWB|1|B5|A|544
8EWB|1|B5|A|545
8EWB|1|B5|U|546
*
8EWB|1|B5|A|592
8EWB|1|B5|U|593
8EWB|1|B5|A|594
8EWB|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A