J5_8EWC_004
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8EWC|1|A1|G|2116, 8EWC|1|A1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8EWC_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.0637
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EWC|1|A1|G|1906
8EWC|1|A1|C|1907
8EWC|1|A1|A|1908
8EWC|1|A1|A|1909
8EWC|1|A1|A|1910
8EWC|1|A1|A|1911
8EWC|1|A1|U|1912
8EWC|1|A1|A|1913
8EWC|1|A1|G|1914
*
8EWC|1|A1|U|1938
8EWC|1|A1|G|1939
*
8EWC|1|A1|U|2109
8EWC|1|A1|G|2110
*
8EWC|1|A1|C|2114
8EWC|1|A1|G|2115
8EWC|1|A1|G|2116
8EWC|1|A1|A|2117
8EWC|1|A1|C|2118
8EWC|1|A1|A|2119
8EWC|1|A1|A|2120
8EWC|1|A1|G|2121
8EWC|1|A1|G|2122
*
8EWC|1|A1|C|2331
8EWC|1|A1|A|2332
8EWC|1|A1|C|2333
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AR
- 60S ribosomal protein L19-A
- Chain AV
- 60S ribosomal protein L23-A
- Chain AW
- RPL24A isoform 1
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain BI
- 40S ribosomal protein S8-A
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