J5_8EWC_007

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUUGU*AAAUAACG*UGGAAUGAG*CGAGG(A2M)ACAAU*AUAG

Length

37 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|B5|C|31
8EWC|1|B5|U|32
8EWC|1|B5|U|33
8EWC|1|B5|G|34
8EWC|1|B5|U|35
*
8EWC|1|B5|A|473
8EWC|1|B5|A|474
8EWC|1|B5|A|475
8EWC|1|B5|U|476
8EWC|1|B5|A|477
8EWC|1|B5|A|478
8EWC|1|B5|C|479
8EWC|1|B5|G|480
*
8EWC|1|B5|U|508
8EWC|1|B5|G|509
8EWC|1|B5|G|510
8EWC|1|B5|A|511
8EWC|1|B5|A|512
8EWC|1|B5|U|513
8EWC|1|B5|G|514
8EWC|1|B5|A|515
8EWC|1|B5|G|516
*
8EWC|1|B5|C|536
8EWC|1|B5|G|537
8EWC|1|B5|A|538
8EWC|1|B5|G|539
8EWC|1|B5|G|540
8EWC|1|B5|A2M|541
8EWC|1|B5|A|542
8EWC|1|B5|C|543
8EWC|1|B5|A|544
8EWC|1|B5|A|545
8EWC|1|B5|U|546
*
8EWC|1|B5|A|592
8EWC|1|B5|U|593
8EWC|1|B5|A|594
8EWC|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A