J5_8EWC_011
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- ACUUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU
- Length
- 48 nucleotides
- Bulged bases
- 8EWC|1|B5|U|639, 8EWC|1|B5|U|694, 8EWC|1|B5|C|696, 8EWC|1|B5|C|697, 8EWC|1|B5|A|740, 8EWC|1|B5|U|742, 8EWC|1|B5|U|813, 8EWC|1|B5|G|815, 8EWC|1|B5|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EWC|1|B5|A|636
8EWC|1|B5|C|637
8EWC|1|B5|U|638
8EWC|1|B5|U|639
8EWC|1|B5|U|640
8EWC|1|B5|G|641
*
8EWC|1|B5|U|693
8EWC|1|B5|U|694
8EWC|1|B5|U|695
8EWC|1|B5|C|696
8EWC|1|B5|C|697
8EWC|1|B5|U|698
8EWC|1|B5|U|699
8EWC|1|B5|C|700
*
8EWC|1|B5|G|738
8EWC|1|B5|G|739
8EWC|1|B5|A|740
8EWC|1|B5|C|741
8EWC|1|B5|U|742
8EWC|1|B5|U|743
8EWC|1|B5|U|744
*
8EWC|1|B5|A|807
8EWC|1|B5|U|808
8EWC|1|B5|A|809
8EWC|1|B5|G|810
8EWC|1|B5|A|811
8EWC|1|B5|A|812
8EWC|1|B5|U|813
8EWC|1|B5|A|814
8EWC|1|B5|G|815
8EWC|1|B5|G|816
8EWC|1|B5|A|817
8EWC|1|B5|C|818
8EWC|1|B5|G|819
8EWC|1|B5|U|820
8EWC|1|B5|U|821
8EWC|1|B5|U|822
*
8EWC|1|B5|A|850
8EWC|1|B5|U|851
8EWC|1|B5|C|852
8EWC|1|B5|G|853
8EWC|1|B5|U|854
8EWC|1|B5|A|855
8EWC|1|B5|A|856
8EWC|1|B5|U|857
8EWC|1|B5|G|858
8EWC|1|B5|A|859
8EWC|1|B5|U|860
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain BE
- 40S ribosomal protein S4-A
- Chain BH
- 40S ribosomal protein S7-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- RPS22A isoform 1
Coloring options: