J5_8FC1_011

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

8FC1|1|2A|U|272|||A, 8FC1|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC1|1|2A|C|268
8FC1|1|2A|U|269
8FC1|1|2A|A|270
8FC1|1|2A|A|271
8FC1|1|2A|A|271|||A
8FC1|1|2A|C|271|||B
*
8FC1|1|2A|G|271|||V
8FC1|1|2A|G|271|||W
8FC1|1|2A|G|271|||X
8FC1|1|2A|U|271|||Y
8FC1|1|2A|C|271|||Z
8FC1|1|2A|G|272
8FC1|1|2A|U|272|||A
8FC1|1|2A|G|272|||B
*
8FC1|1|2A|C|366
8FC1|1|2A|G|370
8FC1|1|2A|A|371
8FC1|1|2A|G|372
8FC1|1|2A|U|373
8FC1|1|2A|A|374
8FC1|1|2A|C|375
*
8FC1|1|2A|G|399
8FC1|1|2A|G|400
8FC1|1|2A|A|401
8FC1|1|2A|A|402
8FC1|1|2A|U|403
8FC1|1|2A|C|404
8FC1|1|2A|U|405
8FC1|1|2A|G|406
*
8FC1|1|2A|U|421
8FC1|1|2A|A|422
8FC1|1|2A|A|423
8FC1|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9