J5_8FC5_002

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

8FC5|1|1A|U|272|||A, 8FC5|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC5|1|1A|C|268
8FC5|1|1A|U|269
8FC5|1|1A|A|270
8FC5|1|1A|A|271
8FC5|1|1A|A|271|||A
8FC5|1|1A|C|271|||B
*
8FC5|1|1A|G|271|||V
8FC5|1|1A|G|271|||W
8FC5|1|1A|G|271|||X
8FC5|1|1A|U|271|||Y
8FC5|1|1A|C|271|||Z
8FC5|1|1A|G|272
8FC5|1|1A|U|272|||A
8FC5|1|1A|G|272|||B
*
8FC5|1|1A|C|366
8FC5|1|1A|G|370
8FC5|1|1A|A|371
8FC5|1|1A|G|372
8FC5|1|1A|U|373
8FC5|1|1A|A|374
8FC5|1|1A|C|375
*
8FC5|1|1A|G|399
8FC5|1|1A|G|400
8FC5|1|1A|A|401
8FC5|1|1A|A|402
8FC5|1|1A|U|403
8FC5|1|1A|C|404
8FC5|1|1A|U|405
8FC5|1|1A|G|406
*
8FC5|1|1A|U|421
8FC5|1|1A|A|422
8FC5|1|1A|A|423
8FC5|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9