3D structure

PDB id
8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
A(MA6)AAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length
37 nucleotides
Bulged bases
8FC5|1|2A|A|2448, 8FC5|1|2A|U|2449, 8FC5|1|2A|U|2609
QA status
Modified nucleotides: MA6, 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FC5|1|2A|A|2057
8FC5|1|2A|MA6|2058
8FC5|1|2A|A|2059
8FC5|1|2A|A|2060
8FC5|1|2A|G|2061
8FC5|1|2A|A|2062
8FC5|1|2A|C|2063
8FC5|1|2A|C|2064
*
8FC5|1|2A|G|2446
8FC5|1|2A|G|2447
8FC5|1|2A|A|2448
8FC5|1|2A|U|2449
8FC5|1|2A|A|2450
8FC5|1|2A|A|2451
8FC5|1|2A|C|2452
8FC5|1|2A|A|2453
*
8FC5|1|2A|U|2500
8FC5|1|2A|C|2501
8FC5|1|2A|G|2502
8FC5|1|2A|2MA|2503
8FC5|1|2A|U|2504
8FC5|1|2A|G|2505
8FC5|1|2A|U|2506
8FC5|1|2A|C|2507
*
8FC5|1|2A|G|2582
8FC5|1|2A|G|2583
8FC5|1|2A|U|2584
8FC5|1|2A|U|2585
8FC5|1|2A|C|2586
8FC5|1|2A|A|2587
8FC5|1|2A|G|2588
*
8FC5|1|2A|C|2606
8FC5|1|2A|G|2607
8FC5|1|2A|G|2608
8FC5|1|2A|U|2609
8FC5|1|2A|C|2610
8FC5|1|2A|U|2611

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L32
Chain 2D
50S ribosomal protein L2
Chain 2E
50S ribosomal protein L3
Chain 2F
50S ribosomal protein L4
Chain 2P
50S ribosomal protein L15
Chain 2Q
50S ribosomal protein L16
Chain 2W
50S ribosomal protein L22

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