J5_8FC6_014

3D structure

PDB id

8FC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

8FC6|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC6|1|2A|C|601
8FC6|1|2A|G|602
8FC6|1|2A|A|603
8FC6|1|2A|G|604
*
8FC6|1|2A|C|624
8FC6|1|2A|G|625
8FC6|1|2A|U|626
8FC6|1|2A|A|627
8FC6|1|2A|G|628
*
8FC6|1|2A|C|635
8FC6|1|2A|G|636
8FC6|1|2A|A|637
8FC6|1|2A|G|638
*
8FC6|1|2A|C|650
8FC6|1|2A|G|651
8FC6|1|2A|C|652
8FC6|1|2A|A|652|||A
8FC6|1|2A|A|652|||B
8FC6|1|2A|G|652|||C
*
8FC6|1|2A|C|652|||V
8FC6|1|2A|A|653
8FC6|1|2A|A|654
8FC6|1|2A|A|655
8FC6|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15