J5_8FIZ_002

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FIZ_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1171

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8FIZ|1|AA|C|36
8FIZ|1|AA|U|37
8FIZ|1|AA|G|38
8FIZ|1|AA|G|39
*
8FIZ|1|AA|C|403
8FIZ|1|AA|G|404
8FIZ|1|AA|U|405
8FIZ|1|AA|G|406
*
8FIZ|1|AA|C|436
8FIZ|1|AA|U|437
8FIZ|1|AA|U|438
8FIZ|1|AA|U|439
8FIZ|1|AA|C|440
8FIZ|1|AA|A|441
8FIZ|1|AA|G|442
*
8FIZ|1|AA|C|492
8FIZ|1|AA|A|493
8FIZ|1|AA|G|494
8FIZ|1|AA|A|495
8FIZ|1|AA|A|496
8FIZ|1|AA|G|497
8FIZ|1|AA|A|498
8FIZ|1|AA|A|499
8FIZ|1|AA|G|500
*
8FIZ|1|AA|C|545
8FIZ|1|AA|A|546
8FIZ|1|AA|A|547
8FIZ|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S12

Chain AI

30S ribosomal protein S4