J5_8FIZ_004

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8FIZ|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FIZ_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0963

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8FIZ|1|BA|C|47
8FIZ|1|BA|G|48
8FIZ|1|BA|A|49
8FIZ|1|BA|U|50
8FIZ|1|BA|G|51
8FIZ|1|BA|A|52
8FIZ|1|BA|A|53
8FIZ|1|BA|G|54
*
8FIZ|1|BA|C|116
8FIZ|1|BA|G|117
8FIZ|1|BA|A|118
8FIZ|1|BA|A|119
8FIZ|1|BA|U|120
8FIZ|1|BA|G|121
*
8FIZ|1|BA|C|130
8FIZ|1|BA|A|131
*
8FIZ|1|BA|U|148
8FIZ|1|BA|A|149
8FIZ|1|BA|U|150
*
8FIZ|1|BA|A|176
8FIZ|1|BA|G|177
8FIZ|1|BA|G|178

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L34