J5_8FKQ_002
3D structure
- PDB id
- 8FKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State A2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 8FKQ|1|L3|C|2289, 8FKQ|1|L3|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FKQ_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0898
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8FKQ|1|L3|G|1335
8FKQ|1|L3|G|1336
8FKQ|1|L3|A|1337
8FKQ|1|L3|G|1338
8FKQ|1|L3|U|1339
8FKQ|1|L3|C|1340
*
8FKQ|1|L3|G|1516
8FKQ|1|L3|G|1517
8FKQ|1|L3|A|1518
8FKQ|1|L3|C|1519
*
8FKQ|1|L3|G|1658
8FKQ|1|L3|U|1659
8FKQ|1|L3|U|1660
8FKQ|1|L3|C|1661
*
8FKQ|1|L3|G|2288
8FKQ|1|L3|C|2289
8FKQ|1|L3|C|2290
*
8FKQ|1|L3|G|2345
8FKQ|1|L3|C|2346
8FKQ|1|L3|A|2347
8FKQ|1|L3|G|2348
8FKQ|1|L3|A|2349
8FKQ|1|L3|U|2350
8FKQ|1|L3|C|2351
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L6
- 60S ribosomal protein L13
- Chain L9
- 60S ribosomal protein L15
- Chain LK
- 60S ribosomal protein L27a
- Chain LL
- 60S ribosomal protein L28
- Chain LQ
- 60S ribosomal protein L32
- Chain NE
- Surfeit locus protein 6
- Chain SA
- 60S ribosomal protein L4
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