J5_8FKS_001
3D structure
- PDB id
- 8FKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State B2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- CGAUGAAG*CGAACG*CG*UAC*GUG
- Length
- 22 nucleotides
- Bulged bases
- 8FKS|1|L1|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FKS|1|L1|C|35
8FKS|1|L1|G|36
8FKS|1|L1|A|37
8FKS|1|L1|U|38
8FKS|1|L1|G|39
8FKS|1|L1|A|40
8FKS|1|L1|A|41
8FKS|1|L1|G|42
*
8FKS|1|L1|C|101
8FKS|1|L1|G|102
8FKS|1|L1|A|103
8FKS|1|L1|A|104
8FKS|1|L1|C|105
8FKS|1|L1|G|106
*
8FKS|1|L1|C|113
8FKS|1|L1|G|114
*
8FKS|1|L1|U|136
8FKS|1|L1|A|137
8FKS|1|L1|C|138
*
8FKS|1|L3|G|19
8FKS|1|L3|U|20
8FKS|1|L3|G|21
Current chains
- Chain L1
- 5.8S rRNA
- Chain L3
- 28S rRNA
Nearby chains
- Chain L9
- 60S ribosomal protein L15
- Chain LH
- 60S ribosomal protein L23a
- Chain LS
- 60S ribosomal protein L35
- Chain LW
- 60S ribosomal protein L37
- Chain SZ
- Nucleolar protein 16
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