J5_8FKX_002

3D structure

PDB id

8FKX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGAGUC*GGAC*GUUC*GCC*GCAGAUC

Length

24 nucleotides

Bulged bases

8FKX|1|L3|C|2289, 8FKX|1|L3|U|2350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FKX_002 not in the Motif Atlas

Homologous match to J5_8P9A_011

Geometric discrepancy: 0.0805

The information below is about J5_8P9A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_08384.1

Basepair signature

cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8FKX|1|L3|G|1335
8FKX|1|L3|G|1336
8FKX|1|L3|A|1337
8FKX|1|L3|G|1338
8FKX|1|L3|U|1339
8FKX|1|L3|C|1340
*
8FKX|1|L3|G|1516
8FKX|1|L3|G|1517
8FKX|1|L3|A|1518
8FKX|1|L3|C|1519
*
8FKX|1|L3|G|1658
8FKX|1|L3|U|1659
8FKX|1|L3|U|1660
8FKX|1|L3|C|1661
*
8FKX|1|L3|G|2288
8FKX|1|L3|C|2289
8FKX|1|L3|C|2290
*
8FKX|1|L3|G|2345
8FKX|1|L3|C|2346
8FKX|1|L3|A|2347
8FKX|1|L3|G|2348
8FKX|1|L3|A|2349
8FKX|1|L3|U|2350
8FKX|1|L3|C|2351

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain L6

60S ribosomal protein L13

Chain L9

60S ribosomal protein L15

Chain LK

60S ribosomal protein L27a

Chain LL

60S ribosomal protein L28

Chain LQ

60S ribosomal protein L32

Chain SA

60S ribosomal protein L4

Chain SJ

pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3