J5_8FL4_003
3D structure
- PDB id
- 8FL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State I3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8FL4|1|L3|G|3620, 8FL4|1|L3|G|3625
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FL4_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1607
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FL4|1|L3|G|2855
8FL4|1|L3|C|2856
8FL4|1|L3|A|2857
8FL4|1|L3|A|2858
8FL4|1|L3|G|2859
8FL4|1|L3|C|2860
8FL4|1|L3|OMC|2861
8FL4|1|L3|G|2862
8FL4|1|L3|G|2863
*
8FL4|1|L3|U|2887
8FL4|1|L3|G|2888
*
8FL4|1|L3|U|3613
8FL4|1|L3|G|3614
*
8FL4|1|L3|C|3618
8FL4|1|L3|G|3619
8FL4|1|L3|G|3620
8FL4|1|L3|A|3621
8FL4|1|L3|C|3622
8FL4|1|L3|C|3623
8FL4|1|L3|A|3624
8FL4|1|L3|G|3625
8FL4|1|L3|G|3626
*
8FL4|1|L3|C|3835
8FL4|1|L3|A|3836
8FL4|1|L3|C|3837
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L19
- Chain LG
- 60S ribosomal protein L23
- Chain LN
- 60S ribosomal protein L3
- Chain NC
- Nucleolar GTP-binding protein 2
- Chain NP
- Zinc finger protein 593
- Chain SV
- Probable ribosome biogenesis protein RLP24
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