J5_8FL4_004
3D structure
- PDB id
- 8FL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State I3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- AAAGAAGAC*GAUAACUGGC(PSU)UGUG*UUUUUGA(PSU)CCUU(5MC)GAUGUC*GGG(UR3)U(PSU)AG*(PSU)AGUUUU
- Length
- 58 nucleotides
- Bulged bases
- 8FL4|1|L3|G|3904, 8FL4|1|L3|A|3906, 8FL4|1|L3|A|4396, 8FL4|1|L3|C|4398, 8FL4|1|L3|U|4399, 8FL4|1|L3|G|4401, 8FL4|1|L3|G|4405, 8FL4|1|L3|U|4406, 8FL4|1|L3|U|4438, 8FL4|1|L3|U|4439, 8FL4|1|L3|G|4440, 8FL4|1|L3|U|4446, 8FL4|1|L3|5MC|4447, 8FL4|1|L3|G|4448, 8FL4|1|L3|A|4449, 8FL4|1|L3|U|4555, 8FL4|1|L3|U|4557
- QA status
- Modified nucleotides: PSU, 5MC, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FL4|1|L3|A|3901
8FL4|1|L3|A|3902
8FL4|1|L3|A|3903
8FL4|1|L3|G|3904
8FL4|1|L3|A|3905
8FL4|1|L3|A|3906
8FL4|1|L3|G|3907
8FL4|1|L3|A|3908
8FL4|1|L3|C|3909
*
8FL4|1|L3|G|4393
8FL4|1|L3|A|4394
8FL4|1|L3|U|4395
8FL4|1|L3|A|4396
8FL4|1|L3|A|4397
8FL4|1|L3|C|4398
8FL4|1|L3|U|4399
8FL4|1|L3|G|4400
8FL4|1|L3|G|4401
8FL4|1|L3|C|4402
8FL4|1|L3|PSU|4403
8FL4|1|L3|U|4404
8FL4|1|L3|G|4405
8FL4|1|L3|U|4406
8FL4|1|L3|G|4407
*
8FL4|1|L3|U|4435
8FL4|1|L3|U|4436
8FL4|1|L3|U|4437
8FL4|1|L3|U|4438
8FL4|1|L3|U|4439
8FL4|1|L3|G|4440
8FL4|1|L3|A|4441
8FL4|1|L3|PSU|4442
8FL4|1|L3|C|4443
8FL4|1|L3|C|4444
8FL4|1|L3|U|4445
8FL4|1|L3|U|4446
8FL4|1|L3|5MC|4447
8FL4|1|L3|G|4448
8FL4|1|L3|A|4449
8FL4|1|L3|U|4450
8FL4|1|L3|G|4451
8FL4|1|L3|U|4452
8FL4|1|L3|C|4453
*
8FL4|1|L3|G|4527
8FL4|1|L3|G|4528
8FL4|1|L3|G|4529
8FL4|1|L3|UR3|4530
8FL4|1|L3|U|4531
8FL4|1|L3|PSU|4532
8FL4|1|L3|A|4533
8FL4|1|L3|G|4534
*
8FL4|1|L3|PSU|4552
8FL4|1|L3|A|4553
8FL4|1|L3|G|4554
8FL4|1|L3|U|4555
8FL4|1|L3|U|4556
8FL4|1|L3|U|4557
8FL4|1|L3|U|4558
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L17
- Chain LN
- 60S ribosomal protein L3
- Chain NB
- Guanine nucleotide-binding protein-like 3
- Chain NC
- Nucleolar GTP-binding protein 2
- Chain NF
- Ribosome biogenesis protein NSA2 homolog
- Chain SA
- 60S ribosomal protein L4
- Chain SF
- 60S ribosomal protein L8
- Chain SR
- GTP-binding protein 4
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