J5_8FLD_001
3D structure
- PDB id
- 8FLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State L1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGAUGAAG*CGAACG*CG*UAC*GUG
- Length
- 22 nucleotides
- Bulged bases
- 8FLD|1|L1|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FLD_001 not in the Motif Atlas
- Homologous match to J5_9H3G_001
- Geometric discrepancy: 0.1084
- The information below is about J5_9H3G_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.4
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8FLD|1|L1|C|35
8FLD|1|L1|G|36
8FLD|1|L1|A|37
8FLD|1|L1|U|38
8FLD|1|L1|G|39
8FLD|1|L1|A|40
8FLD|1|L1|A|41
8FLD|1|L1|G|42
*
8FLD|1|L1|C|101
8FLD|1|L1|G|102
8FLD|1|L1|A|103
8FLD|1|L1|A|104
8FLD|1|L1|C|105
8FLD|1|L1|G|106
*
8FLD|1|L1|C|113
8FLD|1|L1|G|114
*
8FLD|1|L1|U|136
8FLD|1|L1|A|137
8FLD|1|L1|C|138
*
8FLD|1|L3|G|19
8FLD|1|L3|U|20
8FLD|1|L3|G|21
Current chains
- Chain L1
- 5.8S rRNA
- Chain L3
- 28S rRNA
Nearby chains
- Chain L9
- 60S ribosomal protein L15
- Chain LH
- 60S ribosomal protein L23a
- Chain LS
- 60S ribosomal protein L35
- Chain LW
- 60S ribosomal protein L37
- Chain LZ
- 60S ribosomal protein L39
- Chain SM
- Pescadillo homolog
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