J5_8FLD_002

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)

Length

24 nucleotides

Bulged bases

8FLD|1|L3|C|2289, 8FLD|1|L3|U|2350

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FLD_002 not in the Motif Atlas

Homologous match to J5_8P9A_011

Geometric discrepancy: 0.0819

The information below is about J5_8P9A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_08384.1

Basepair signature

cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8FLD|1|L3|G|1335
8FLD|1|L3|G|1336
8FLD|1|L3|A|1337
8FLD|1|L3|G|1338
8FLD|1|L3|U|1339
8FLD|1|L3|OMC|1340
*
8FLD|1|L3|G|1516
8FLD|1|L3|G|1517
8FLD|1|L3|A|1518
8FLD|1|L3|C|1519
*
8FLD|1|L3|G|1658
8FLD|1|L3|U|1659
8FLD|1|L3|U|1660
8FLD|1|L3|C|1661
*
8FLD|1|L3|G|2288
8FLD|1|L3|C|2289
8FLD|1|L3|C|2290
*
8FLD|1|L3|G|2345
8FLD|1|L3|C|2346
8FLD|1|L3|A|2347
8FLD|1|L3|G|2348
8FLD|1|L3|A|2349
8FLD|1|L3|U|2350
8FLD|1|L3|OMC|2351

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain L6

60S ribosomal protein L13

Chain L9

60S ribosomal protein L15

Chain LK

60S ribosomal protein L27a

Chain LL

60S ribosomal protein L28

Chain LQ

60S ribosomal protein L32

Chain SA

60S ribosomal protein L4

Chain SR

GTP-binding protein 4