J5_8FOM_007
3D structure
- PDB id
- 8FOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 8FOM|1|RA|G|1758, 8FOM|1|RA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FOM_007 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.0942
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FOM|1|RA|G|1674
8FOM|1|RA|C|1675
8FOM|1|RA|A|1676
8FOM|1|RA|A|1677
8FOM|1|RA|G|1678
8FOM|1|RA|U|1679
8FOM|1|RA|U|1680
8FOM|1|RA|G|1681
8FOM|1|RA|G|1682
*
8FOM|1|RA|U|1706
8FOM|1|RA|G|1707
*
8FOM|1|RA|C|1751
8FOM|1|RA|C|1752
*
8FOM|1|RA|G|1756
8FOM|1|RA|U|1757
8FOM|1|RA|G|1758
8FOM|1|RA|A|1759
8FOM|1|RA|A|1760
8FOM|1|RA|C|1761
8FOM|1|RA|A|1762
8FOM|1|RA|G|1763
8FOM|1|RA|G|1764
*
8FOM|1|RA|C|1988
8FOM|1|RA|G|1989
8FOM|1|RA|C|1990
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain RE
- 50S ribosomal protein L3
- Chain RO
- 50S ribosomal protein L14
- Chain RT
- 50S ribosomal protein L19
Coloring options: