J5_8FR8_005

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FR8|1|A|C|694
8FR8|1|A|G|695
8FR8|1|A|A|696
8FR8|1|A|G|697
*
8FR8|1|A|C|718
8FR8|1|A|G|719
8FR8|1|A|C|720
8FR8|1|A|A|721
8FR8|1|A|G|722
*
8FR8|1|A|C|729
8FR8|1|A|G|730
8FR8|1|A|A|731
8FR8|1|A|G|732
*
8FR8|1|A|C|744
8FR8|1|A|G|745
8FR8|1|A|U|746
8FR8|1|A|A|747
8FR8|1|A|U|748
8FR8|1|A|C|749
*
8FR8|1|A|G|766
8FR8|1|A|U|767
8FR8|1|A|G|768
8FR8|1|A|U|769
8FR8|1|A|A|770
8FR8|1|A|G|771

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain M

50S ribosomal protein L4

Chain V

50S ribosomal protein L15

Chain x

50S ribosomal protein L35