J5_8FR8_007

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCU

Length

35 nucleotides

Bulged bases

8FR8|1|A|A|2286, 8FR8|1|A|A|2672, 8FR8|1|A|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FR8|1|A|A|2281
8FR8|1|A|A|2282
8FR8|1|A|A|2283
8FR8|1|A|A|2284
8FR8|1|A|G|2285
8FR8|1|A|A|2286
8FR8|1|A|C|2287
8FR8|1|A|C|2288
*
8FR8|1|A|G|2670
8FR8|1|A|G|2671
8FR8|1|A|A|2672
8FR8|1|A|U|2673
8FR8|1|A|A|2674
8FR8|1|A|A|2675
8FR8|1|A|C|2676
8FR8|1|A|A|2677
*
8FR8|1|A|U|2724
8FR8|1|A|C|2725
8FR8|1|A|G|2726
8FR8|1|A|A|2727
8FR8|1|A|U|2728
8FR8|1|A|G|2729
8FR8|1|A|U|2730
*
8FR8|1|A|G|2807
8FR8|1|A|U|2808
8FR8|1|A|U|2809
8FR8|1|A|U|2810
8FR8|1|A|A|2811
8FR8|1|A|G|2812
*
8FR8|1|A|C|2830
8FR8|1|A|G|2831
8FR8|1|A|G|2832
8FR8|1|A|U|2833
8FR8|1|A|C|2834
8FR8|1|A|U|2835

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 8

50S ribosomal protein L32

Chain E

Transfer RNA; tRNA

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L3

Chain M

50S ribosomal protein L4

Chain N

50S ribosomal protein L16

Chain V

50S ribosomal protein L15

Chain Y

50S ribosomal protein L22