J5_8FTO_004

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8FTO|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FTO_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0439

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8FTO|1|a|C|47
8FTO|1|a|G|48
8FTO|1|a|A|49
8FTO|1|a|U|50
8FTO|1|a|G|51
8FTO|1|a|A|52
8FTO|1|a|A|53
8FTO|1|a|G|54
*
8FTO|1|a|C|116
8FTO|1|a|G|117
8FTO|1|a|A|118
8FTO|1|a|A|119
8FTO|1|a|U|120
8FTO|1|a|G|121
*
8FTO|1|a|C|130
8FTO|1|a|A|131
*
8FTO|1|a|U|148
8FTO|1|a|A|149
8FTO|1|a|U|150
*
8FTO|1|a|A|176
8FTO|1|a|G|177
8FTO|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34