J5_8FZD_001

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8FZD|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FZD_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0797

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8FZD|1|A|C|47
8FZD|1|A|G|48
8FZD|1|A|A|49
8FZD|1|A|U|50
8FZD|1|A|G|51
8FZD|1|A|A|52
8FZD|1|A|A|53
8FZD|1|A|G|54
*
8FZD|1|A|C|116
8FZD|1|A|G|117
8FZD|1|A|A|118
8FZD|1|A|A|119
8FZD|1|A|U|120
8FZD|1|A|G|121
*
8FZD|1|A|C|130
8FZD|1|A|A|131
*
8FZD|1|A|U|148
8FZD|1|A|A|149
8FZD|1|A|U|150
*
8FZD|1|A|A|176
8FZD|1|A|G|177
8FZD|1|A|G|178

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34