3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
8FZD|1|A|A|2062, 8FZD|1|A|A|2448, 8FZD|1|A|U|2609
QA status
Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FZD|1|A|G|2057
8FZD|1|A|A|2058
8FZD|1|A|A|2059
8FZD|1|A|A|2060
8FZD|1|A|G|2061
8FZD|1|A|A|2062
8FZD|1|A|C|2063
8FZD|1|A|C|2064
*
8FZD|1|A|G|2446
8FZD|1|A|G|2447
8FZD|1|A|A|2448
8FZD|1|A|H2U|2449
8FZD|1|A|A|2450
8FZD|1|A|A|2451
8FZD|1|A|C|2452
8FZD|1|A|A|2453
*
8FZD|1|A|U|2500
8FZD|1|A|C|2501
8FZD|1|A|G|2502
8FZD|1|A|2MA|2503
8FZD|1|A|PSU|2504
8FZD|1|A|G|2505
8FZD|1|A|U|2506
8FZD|1|A|C|2507
*
8FZD|1|A|G|2582
8FZD|1|A|G|2583
8FZD|1|A|U|2584
8FZD|1|A|U|2585
8FZD|1|A|U|2586
8FZD|1|A|A|2587
8FZD|1|A|G|2588
*
8FZD|1|A|C|2606
8FZD|1|A|G|2607
8FZD|1|A|G|2608
8FZD|1|A|U|2609
8FZD|1|A|C|2610
8FZD|1|A|C|2611

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L32
Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain N
50S ribosomal protein L15
Chain U
50S ribosomal protein L22
Chain w
Peptide chain release factor 1
Chain x
Transfer RNA; tRNA

Coloring options:

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