J5_8FZF_001

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8FZF|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FZF_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0943

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8FZF|1|A|C|47
8FZF|1|A|G|48
8FZF|1|A|A|49
8FZF|1|A|U|50
8FZF|1|A|G|51
8FZF|1|A|A|52
8FZF|1|A|A|53
8FZF|1|A|G|54
*
8FZF|1|A|C|116
8FZF|1|A|G|117
8FZF|1|A|A|118
8FZF|1|A|A|119
8FZF|1|A|U|120
8FZF|1|A|G|121
*
8FZF|1|A|C|130
8FZF|1|A|A|131
*
8FZF|1|A|U|148
8FZF|1|A|A|149
8FZF|1|A|U|150
*
8FZF|1|A|A|176
8FZF|1|A|G|177
8FZF|1|A|G|178

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34