J5_8FZH_001

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8FZH|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FZH_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0741

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8FZH|1|A|C|47
8FZH|1|A|G|48
8FZH|1|A|A|49
8FZH|1|A|U|50
8FZH|1|A|G|51
8FZH|1|A|A|52
8FZH|1|A|A|53
8FZH|1|A|G|54
*
8FZH|1|A|C|116
8FZH|1|A|G|117
8FZH|1|A|A|118
8FZH|1|A|A|119
8FZH|1|A|U|120
8FZH|1|A|G|121
*
8FZH|1|A|C|130
8FZH|1|A|A|131
*
8FZH|1|A|U|148
8FZH|1|A|A|149
8FZH|1|A|U|150
*
8FZH|1|A|A|176
8FZH|1|A|G|177
8FZH|1|A|G|178

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34