J5_8FZJ_001

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8FZJ|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FZJ_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0728

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8FZJ|1|A|C|47
8FZJ|1|A|G|48
8FZJ|1|A|A|49
8FZJ|1|A|U|50
8FZJ|1|A|G|51
8FZJ|1|A|A|52
8FZJ|1|A|A|53
8FZJ|1|A|G|54
*
8FZJ|1|A|C|116
8FZJ|1|A|G|117
8FZJ|1|A|A|118
8FZJ|1|A|A|119
8FZJ|1|A|U|120
8FZJ|1|A|G|121
*
8FZJ|1|A|C|130
8FZJ|1|A|A|131
*
8FZJ|1|A|U|148
8FZJ|1|A|A|149
8FZJ|1|A|U|150
*
8FZJ|1|A|A|176
8FZJ|1|A|G|177
8FZJ|1|A|G|178

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34