J5_8FZJ_005
3D structure
- PDB id
- 8FZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8FZJ|1|A|A|2062, 8FZJ|1|A|A|2448, 8FZJ|1|A|H2U|2449, 8FZJ|1|A|U|2585, 8FZJ|1|A|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FZJ|1|A|G|2057
8FZJ|1|A|A|2058
8FZJ|1|A|A|2059
8FZJ|1|A|A|2060
8FZJ|1|A|G|2061
8FZJ|1|A|A|2062
8FZJ|1|A|C|2063
8FZJ|1|A|C|2064
*
8FZJ|1|A|G|2446
8FZJ|1|A|G|2447
8FZJ|1|A|A|2448
8FZJ|1|A|H2U|2449
8FZJ|1|A|A|2450
8FZJ|1|A|A|2451
8FZJ|1|A|C|2452
8FZJ|1|A|A|2453
*
8FZJ|1|A|U|2500
8FZJ|1|A|C|2501
8FZJ|1|A|G|2502
8FZJ|1|A|2MA|2503
8FZJ|1|A|PSU|2504
8FZJ|1|A|G|2505
8FZJ|1|A|U|2506
8FZJ|1|A|C|2507
*
8FZJ|1|A|G|2582
8FZJ|1|A|G|2583
8FZJ|1|A|U|2584
8FZJ|1|A|U|2585
8FZJ|1|A|U|2586
8FZJ|1|A|A|2587
8FZJ|1|A|G|2588
*
8FZJ|1|A|C|2606
8FZJ|1|A|G|2607
8FZJ|1|A|G|2608
8FZJ|1|A|U|2609
8FZJ|1|A|C|2610
8FZJ|1|A|C|2611
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L22
Coloring options: