J5_8G29_002

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

8G29|1|1A|U|272|||A, 8G29|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G29|1|1A|C|268
8G29|1|1A|U|269
8G29|1|1A|A|270
8G29|1|1A|A|271
8G29|1|1A|A|271|||A
8G29|1|1A|C|271|||B
*
8G29|1|1A|G|271|||V
8G29|1|1A|G|271|||W
8G29|1|1A|G|271|||X
8G29|1|1A|U|271|||Y
8G29|1|1A|C|271|||Z
8G29|1|1A|G|272
8G29|1|1A|U|272|||A
8G29|1|1A|G|272|||B
*
8G29|1|1A|C|366
8G29|1|1A|G|370
8G29|1|1A|A|371
8G29|1|1A|G|372
8G29|1|1A|U|373
8G29|1|1A|A|374
8G29|1|1A|C|375
*
8G29|1|1A|G|399
8G29|1|1A|G|400
8G29|1|1A|A|401
8G29|1|1A|A|402
8G29|1|1A|U|403
8G29|1|1A|C|404
8G29|1|1A|U|405
8G29|1|1A|G|406
*
8G29|1|1A|U|421
8G29|1|1A|A|422
8G29|1|1A|A|423
8G29|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9