J5_8G2B_014

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

8G2B|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G2B|1|2A|C|601
8G2B|1|2A|G|602
8G2B|1|2A|A|603
8G2B|1|2A|G|604
*
8G2B|1|2A|C|624
8G2B|1|2A|G|625
8G2B|1|2A|U|626
8G2B|1|2A|A|627
8G2B|1|2A|G|628
*
8G2B|1|2A|C|635
8G2B|1|2A|G|636
8G2B|1|2A|A|637
8G2B|1|2A|G|638
*
8G2B|1|2A|C|650
8G2B|1|2A|G|651
8G2B|1|2A|C|652
8G2B|1|2A|A|652|||A
8G2B|1|2A|A|652|||B
8G2B|1|2A|G|652|||C
*
8G2B|1|2A|C|652|||V
8G2B|1|2A|A|653
8G2B|1|2A|A|654
8G2B|1|2A|A|655
8G2B|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15