J5_8G2B_015

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

8G2B|1|2A|G|1758, 8G2B|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G2B_015 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0587

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8G2B|1|2A|G|1674
8G2B|1|2A|C|1675
8G2B|1|2A|A|1676
8G2B|1|2A|A|1677
8G2B|1|2A|G|1678
8G2B|1|2A|U|1679
8G2B|1|2A|U|1680
8G2B|1|2A|G|1681
8G2B|1|2A|G|1682
*
8G2B|1|2A|U|1706
8G2B|1|2A|G|1707
*
8G2B|1|2A|C|1751
8G2B|1|2A|C|1752
*
8G2B|1|2A|G|1756
8G2B|1|2A|U|1757
8G2B|1|2A|G|1758
8G2B|1|2A|A|1759
8G2B|1|2A|A|1760
8G2B|1|2A|C|1761
8G2B|1|2A|A|1762
8G2B|1|2A|G|1763
8G2B|1|2A|G|1764
*
8G2B|1|2A|C|1988
8G2B|1|2A|G|1989
8G2B|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA