Loop J5_8G2B

3D structure

PDB id: 8G2B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCG(8AH)UGUC*GGUUCAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 8G2B|1|2A|A|2448, 8G2B|1|2A|U|2449, 8G2B|1|2A|U|2609
QA status: Modified nucleotides: 8AH

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8G2B|1|2A|A|2057
8G2B|1|2A|A|2058
8G2B|1|2A|A|2059
8G2B|1|2A|A|2060
8G2B|1|2A|G|2061
8G2B|1|2A|A|2062
8G2B|1|2A|C|2063
8G2B|1|2A|C|2064
*
8G2B|1|2A|G|2446
8G2B|1|2A|G|2447
8G2B|1|2A|A|2448
8G2B|1|2A|U|2449
8G2B|1|2A|A|2450
8G2B|1|2A|A|2451
8G2B|1|2A|C|2452
8G2B|1|2A|A|2453
*
8G2B|1|2A|U|2500
8G2B|1|2A|C|2501
8G2B|1|2A|G|2502
8G2B|1|2A|8AH|2503
8G2B|1|2A|U|2504
8G2B|1|2A|G|2505
8G2B|1|2A|U|2506
8G2B|1|2A|C|2507
*
8G2B|1|2A|G|2582
8G2B|1|2A|G|2583
8G2B|1|2A|U|2584
8G2B|1|2A|U|2585
8G2B|1|2A|C|2586
8G2B|1|2A|A|2587
8G2B|1|2A|G|2588
*
8G2B|1|2A|C|2606
8G2B|1|2A|G|2607
8G2B|1|2A|G|2608
8G2B|1|2A|U|2609
8G2B|1|2A|C|2610
8G2B|1|2A|U|2611

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 20: 50S ribosomal protein L27
Chain 25: 50S ribosomal protein L32
Chain 2D: 50S ribosomal protein L2
Chain 2E: 50S ribosomal protein L3
Chain 2F: 50S ribosomal protein L4
Chain 2P: 50S ribosomal protein L15
Chain 2Q: 50S ribosomal protein L16
Chain 2W: 50S ribosomal protein L22
Chain 2w: Transfer RNA; tRNA
Chain 2x: Transfer RNA; tRNA

J5_8G2B_016