J5_8G2C_011

3D structure

PDB id

8G2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

8G2C|1|2A|U|272|||A, 8G2C|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G2C|1|2A|C|268
8G2C|1|2A|U|269
8G2C|1|2A|A|270
8G2C|1|2A|A|271
8G2C|1|2A|A|271|||A
8G2C|1|2A|C|271|||B
*
8G2C|1|2A|G|271|||V
8G2C|1|2A|G|271|||W
8G2C|1|2A|G|271|||X
8G2C|1|2A|U|271|||Y
8G2C|1|2A|C|271|||Z
8G2C|1|2A|G|272
8G2C|1|2A|U|272|||A
8G2C|1|2A|G|272|||B
*
8G2C|1|2A|C|366
8G2C|1|2A|G|370
8G2C|1|2A|A|371
8G2C|1|2A|G|372
8G2C|1|2A|U|373
8G2C|1|2A|A|374
8G2C|1|2A|C|375
*
8G2C|1|2A|G|399
8G2C|1|2A|G|400
8G2C|1|2A|A|401
8G2C|1|2A|A|402
8G2C|1|2A|U|403
8G2C|1|2A|C|404
8G2C|1|2A|U|405
8G2C|1|2A|G|406
*
8G2C|1|2A|U|421
8G2C|1|2A|A|422
8G2C|1|2A|A|423
8G2C|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9