3D structure

PDB id
8G2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GCAAGUUGG*UG*CC*GUGAACAGG*CGC
Length
25 nucleotides
Bulged bases
8G2D|1|1A|G|1758, 8G2D|1|1A|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8G2D_005 not in the Motif Atlas
Homologous match to J5_9DFE_005
Geometric discrepancy: 0.043
The information below is about J5_9DFE_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8G2D|1|1A|G|1674
8G2D|1|1A|C|1675
8G2D|1|1A|A|1676
8G2D|1|1A|A|1677
8G2D|1|1A|G|1678
8G2D|1|1A|U|1679
8G2D|1|1A|U|1680
8G2D|1|1A|G|1681
8G2D|1|1A|G|1682
*
8G2D|1|1A|U|1706
8G2D|1|1A|G|1707
*
8G2D|1|1A|C|1751
8G2D|1|1A|C|1752
*
8G2D|1|1A|G|1756
8G2D|1|1A|U|1757
8G2D|1|1A|G|1758
8G2D|1|1A|A|1759
8G2D|1|1A|A|1760
8G2D|1|1A|C|1761
8G2D|1|1A|A|1762
8G2D|1|1A|G|1763
8G2D|1|1A|G|1764
*
8G2D|1|1A|C|1988
8G2D|1|1A|G|1989
8G2D|1|1A|C|1990

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1E
50S ribosomal protein L3
Chain 1O
50S ribosomal protein L14
Chain 1T
50S ribosomal protein L19
Chain 1a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.8528 s
Application loaded.