J5_8G2D_014

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

8G2D|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G2D|1|2A|C|601
8G2D|1|2A|G|602
8G2D|1|2A|A|603
8G2D|1|2A|G|604
*
8G2D|1|2A|C|624
8G2D|1|2A|G|625
8G2D|1|2A|U|626
8G2D|1|2A|A|627
8G2D|1|2A|G|628
*
8G2D|1|2A|C|635
8G2D|1|2A|G|636
8G2D|1|2A|A|637
8G2D|1|2A|G|638
*
8G2D|1|2A|C|650
8G2D|1|2A|G|651
8G2D|1|2A|C|652
8G2D|1|2A|A|652|||A
8G2D|1|2A|A|652|||B
8G2D|1|2A|G|652|||C
*
8G2D|1|2A|C|652|||V
8G2D|1|2A|A|653
8G2D|1|2A|A|654
8G2D|1|2A|A|655
8G2D|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15