J5_8G34_001

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8G34|1|B|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G34_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0774

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8G34|1|B|C|47
8G34|1|B|G|48
8G34|1|B|A|49
8G34|1|B|U|50
8G34|1|B|G|51
8G34|1|B|A|52
8G34|1|B|A|53
8G34|1|B|G|54
*
8G34|1|B|C|116
8G34|1|B|G|117
8G34|1|B|A|118
8G34|1|B|A|119
8G34|1|B|U|120
8G34|1|B|G|121
*
8G34|1|B|C|130
8G34|1|B|A|131
*
8G34|1|B|U|148
8G34|1|B|A|149
8G34|1|B|U|150
*
8G34|1|B|A|176
8G34|1|B|G|177
8G34|1|B|G|178

Current chains

Chain B

23S

Nearby chains

Chain 2

50S ribosomal protein L34