J5_8G34_007

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G34_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0925

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8G34|1|v|C|36
8G34|1|v|U|37
8G34|1|v|G|38
8G34|1|v|G|39
*
8G34|1|v|C|403
8G34|1|v|G|404
8G34|1|v|U|405
8G34|1|v|G|406
*
8G34|1|v|C|436
8G34|1|v|U|437
8G34|1|v|U|438
8G34|1|v|U|439
8G34|1|v|C|440
*
8G34|1|v|G|497
8G34|1|v|A|498
8G34|1|v|A|499
8G34|1|v|G|500
*
8G34|1|v|C|545
8G34|1|v|A|546
8G34|1|v|A|547
8G34|1|v|G|548

Current chains

Chain v

16S

Nearby chains

Chain c

30S ribosomal protein S4

Chain k

30S ribosomal protein S12