J5_8G38_008

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G38_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0903

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8G38|1|v|C|36
8G38|1|v|U|37
8G38|1|v|G|38
8G38|1|v|G|39
*
8G38|1|v|C|403
8G38|1|v|G|404
8G38|1|v|U|405
8G38|1|v|G|406
*
8G38|1|v|C|436
8G38|1|v|U|437
8G38|1|v|U|438
8G38|1|v|U|439
8G38|1|v|C|440
8G38|1|v|A|441
8G38|1|v|G|442
*
8G38|1|v|C|492
8G38|1|v|A|493
8G38|1|v|G|494
8G38|1|v|A|495
8G38|1|v|A|496
8G38|1|v|G|497
8G38|1|v|A|498
8G38|1|v|A|499
8G38|1|v|G|500
*
8G38|1|v|C|545
8G38|1|v|A|546
8G38|1|v|A|547
8G38|1|v|G|548

Current chains

Chain v

16S

Nearby chains

Chain c

30S ribosomal protein S4

Chain k

30S ribosomal protein S12