J5_8G38_009

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGGACGGG*CACU*AGAC*GGCAG

Length

25 nucleotides

Bulged bases

8G38|1|v|A|109, 8G38|1|v|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G38|1|v|C|58
8G38|1|v|A|59
8G38|1|v|A|60
8G38|1|v|G|61
*
8G38|1|v|C|106
8G38|1|v|G|107
8G38|1|v|G|108
8G38|1|v|A|109
8G38|1|v|C|110
8G38|1|v|G|111
8G38|1|v|G|112
8G38|1|v|G|113
*
8G38|1|v|C|314
8G38|1|v|A|315
8G38|1|v|C|316
8G38|1|v|U|317
*
8G38|1|v|A|336
8G38|1|v|G|337
8G38|1|v|A|338
8G38|1|v|C|339
*
8G38|1|v|G|350
8G38|1|v|G|351
8G38|1|v|C|352
8G38|1|v|A|353
8G38|1|v|G|354

Current chains

Chain v

16S

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19

Chain o

30S ribosomal protein S16

Chain s

30S ribosomal protein S20